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(Ebook) Gene and Protein Evolution 1st Edition by Jean nicolas Volff ISBN 9783805583404 3805583400

  • SKU: EBN-1393522
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Authors:Jean-nicolas Volff
Pages:203 pages.
Year:2007
Editon:1
Publisher:S. Karger AG (Switzerland)
Language:english
File Size:1.69 MB
Format:pdf
ISBNS:9783805583404, 3805583400
Categories: Ebooks

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(Ebook) Gene and Protein Evolution 1st Edition by Jean nicolas Volff ISBN 9783805583404 3805583400

(Ebook) Gene and Protein Evolution 1st Edition by Jean nicolas Volff - Ebook PDF Instant Download/Delivery: 9783805583404 ,3805583400
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ISBN 10: 3805583400
ISBN 13: 9783805583404
Author: Jean nicolas Volff

"Our way of understanding evolution has changed completely with the era of genomics, particularly since the emergence of comparative genomics, a discipline allowing the analysis of complete genomes and biological processes over vast periods of time. In this volume, internationally recognized experts present and discuss an update of the evolutionary processes at the onset of organismal diversification and complexity, and review the mechanisms leading to the acquisition of new traits and functions. Different levels of evolution are considered, from internal modules in genes and proteins to interactomes and biological networks, with integration of the influence of both the genomic environment and the ecological context. Particular emphasis will be given to the origin of novel genes and gene functions as well as to the evolutionary impact of the duplication of genetic information, with several chapters devoted to transposable elements. Providing an excellent update on gene and protein evolution, this book will be appreciated by researchers in biology and medicine, biology teachers and anyone interested in evolution and genomics."--Publisher's description

(Ebook) Gene and Protein Evolution 1st Edition Table of contents:

Correlated Patterns
Correlated Processes
Incorporating Functional Information
Within Genes: Proteins
Discussion
References

Protein-Protein Interaction Network as a Typical Example of Biological Networks
Evolutionary Studies of Protein-Protein Interaction Networks
Differential Evolutionary Rates of Duplicated Genes in Protein Interaction Network
Losses of PPIs for Proteins Encoded by Duplicated Genes
Functional Divergence through Changes in PPIs
Tendency of PPI Divergence for Duplicated Pair in Different Functional Classes
The Evolutionary Rate of a Protein is Influenced by Features of the Interacting Partners
SF vs. DF Proteins
Comparison of Evolutionary Rates among SF-DP, SF-SP, DF-DP and DF-SP Proteins
Prospect of Studies in PPI Network Evolution
References

Type III Secretion
An Evolutionary Conundrum?
Modularity
Gene Duplication
Recombination
Molecular Phylogenies and Arguments from Cladistics
‘Difficulties on Theory’: EspA and FliK
Is FliJ Homologue of YscO?
Origins of the Flagellar Motor: From Ion Channel to Rotor?
Case Study 3: The Search for Outliers
References

Abstract
The Demography of Packaging ATPases in Large DNA Viruses
Multiple Origins for Different Packaging ATPases within the P-loop NTPase Fold
Diversity of the Terminase-Dependent Packaging Systems: A Common Origin for Portal Proteins of All Tailed Bacteriophages
Contextual Information and Inference of Novel Components of the Terminase Portal Systems
Evolutionary Considerations and General Conclusions
References

Abstract
Evolution of Transcription Factors and Target Genes
Evolution of the Local Network Structure
Evolution of the Global Network Structure
Conclusion
Acknowledgements
References

Abstract
Identification of Suitable Data Sets
Search for Regulatory Motifs Conserved in Each of the Gene Sets
Identifying Motifs Supporting Subfunctionalization
Results
Identification of Motifs Supporting Subfunctionalization
Detailed Description of the Datasets with Subfunctionalized Motifs
Discussion
References

Origin of Sex Chromosomes
Theoretical Predictions for Molecular Evolution of X-linked and Autosomal Genes
Patterns of In Situ Evolution of X-linked and Autosomal Genes
Gene Complements of the X Chromosome Versus the Autosomes
Patterns of Gene Traffic on the X and the Autosomes
Summary
References

Abstract
Distribution of Coding Repeats and Homopeptides
Coding Repeats and Protein Function
Structure of polyA and polyQ Repeats
Formation of Aggregates by Homopeptides
Coding Repeats and Evolution
References

Abstract
Molecular Mechanisms Leading to Chimeric Genes
Transposable Elements as ‘Fragment Joiners’
Nonhomologous Recombination: Ancient Chimeras
Nonhomologous Recombination – Evolutionarily Recent Chimeras
A Recent Example: Insights from Hun, a Young Gene Generated by NHR
Transposable Elements as ‘Fragment Joiners’
Chimeric Genes Generated by Gene Fusions
References

Transposable Elements Defined
Selfish DNA Theory of TEs
Molecular Domestication
Host CDSs from TEs
Genome Wide Analyses
A New Framework is Needed
References

Abstract
Class I Transposons
Class II Elements
TE Cassettes in mRNAs
TE Sequences in Promoter Regions
Final Remarks
References

Abstract
Protein-Coding Genes Derived from Retroelements
Protein-Coding Retrogenes
Neuronal BC1 RNA in Rodents
Alu-Derived Neuronal npcRNAs in Primates
Retroposed Copies of snoRNAs and Pre-miRNAs
The Tip of the Iceberg
References

Author Index

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